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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037899 through 18771 annotations produced 1 hits



Ribosomal protein L24-like (RpL24-like):

Annotation Number : CG6764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037899
Gbrowse : chr3R:7256461-7257397 (-) // 100.0 //
Probeset : 1633283_at
Accessions : protein= NP_650073;, nucleotide= NM_141816;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0037899.
VDRC has 1 RNAi stocks for FBgn0037899 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1423 254 of 4 1.40Up
Head1143 744 of 4 1.10None
Eye2509 924 of 4 2.42Up
Thoracicoabdominal ganglion1798 814 of 4 1.70Up
Salivary gland921 244 of 4 0.89None
Crop967 274 of 4 0.90None
Midgut731 194 of 4 0.70Down
Tubule641 204 of 4 0.60Down
Hindgut976 244 of 4 0.90None
Heart1386 1354 of 4 1.34None
Fat body935 2284 of 4 0.90None
Ovary1046 134 of 4 1.00None
Testis211 104 of 4 0.20Down
Male accessory glands1342 1344 of 4 1.30None
Virgin spermatheca565 704 of 4 0.55Down
Mated spermatheca689 784 of 4 0.66Down
Adult carcass933 414 of 4 0.90None
Larval CNS705 634 of 4 0.68Down
Larval Salivary gland637 584 of 4 0.61Down
Larval midgut295 214 of 4 0.29Down
Larval tubule401 204 of 4 0.40Down
Larval hindgut670 284 of 4 0.65Down
Larval fat body607 674 of 4 0.60Down
Larval trachea1364 474 of 4 1.32Up
Larval carcass644 564 of 4 0.62Down
S2 cells (growing)1360 254 of 4 1.31Up
Whole fly1037 714 of 4

Looking for FBgn0037899. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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