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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037901 through 18771 annotations produced 2 hits



(CG6744):

Annotation Number : CG6744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037901
Gbrowse : chr3R:7259209-7261425 (-) // 100.0 //
Probeset : 1632402_at
Accessions : protein= NP_650075;, nucleotide= NM_141818;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0037901.
BDGP gene expression has embryonic in situ data for CG6744: 2 pix of staining in 1 body parts.
Homophila reports that CG6744 is a close match (2e-11) to human gene RECQ3;RECQL2;WRN (NP_000544), a gene associated with Werner syndrome, 277700 (3).
VDRC has 3 RNAi stocks for FBgn0037901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 14 of 4 0.30Down
Head48 ± 34 of 4 0.40Down
Eye27 ± 34 of 4 0.22Down
Thoracicoabdominal ganglion35 ± 24 of 4 0.30Down
Salivary gland45 ± 24 of 4 0.36Down
Crop72 ± 54 of 4 0.60Down
Midgut97 ± 44 of 4 0.80Down
Tubule104 ± 94 of 4 0.80Down
Hindgut56 ± 34 of 4 0.50Down
Heart120 ± 44 of 4 0.98None
Fat body166 ± 64 of 4 1.35Up
Ovary216 ± 94 of 4 1.80Up
Testis151 ± 84 of 4 1.20Up
Male accessory glands65 ± 44 of 4 0.50Down
Virgin spermatheca118 ± 44 of 4 0.96None
Mated spermatheca96 ± 104 of 4 0.78None
Adult carcass96 ± 44 of 4 0.80Down
Larval CNS114 ± 74 of 4 0.93None
Larval Salivary gland110 ± 74 of 4 0.90None
Larval midgut229 ± 64 of 4 1.86Up
Larval tubule381 ± 104 of 4 3.10Up
Larval hindgut188 ± 124 of 4 1.53Up
Larval fat body308 ± 344 of 4 2.50Up
Larval trachea149 ± 284 of 4 1.21None
Larval carcass230 ± 234 of 4 1.87Up
S2 cells (growing)176 ± 44 of 4 1.43Up
Whole fly123 ± 24 of 4



/// (CG4291 /// CG6744):

Annotation Number : CG4291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031287
Gbrowse : chr2L:851244-852709 (-) // 100.0 //
Probeset : 1623993_at
Accessions : protein= NP_608551; /// NP_650075;, nucleotide= NM_134707; /// NM_141818;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006139 // nucleobase
FlyMine data for FBgn0031287.
BDGP gene expression has embryonic in situ data for CG4291: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 54 of 4 1.10None
Head57 ± 54 of 4 0.80None
Eye52 ± 04 of 4 0.75Down
Thoracicoabdominal ganglion83 ± 94 of 4 1.20None
Salivary gland74 ± 14 of 4 1.07None
Crop64 ± 34 of 4 0.90None
Midgut58 ± 24 of 4 0.80Down
Tubule58 ± 44 of 4 0.80Down
Hindgut52 ± 34 of 4 0.70Down
Heart28 ± 34 of 4 0.41Down
Fat body45 ± 104 of 4 0.65Down
Ovary99 ± 34 of 4 1.40Up
Testis70 ± 54 of 4 1.00None
Male accessory glands63 ± 54 of 4 0.90None
Virgin spermatheca42 ± 44 of 4 0.61Down
Mated spermatheca51 ± 14 of 4 0.74Down
Adult carcass62 ± 114 of 4 0.90None
Larval CNS76 ± 64 of 4 1.10None
Larval Salivary gland74 ± 54 of 4 1.07None
Larval midgut54 ± 24 of 4 0.77Down
Larval tubule52 ± 34 of 4 0.70Down
Larval hindgut48 ± 24 of 4 0.70Down
Larval fat body59 ± 44 of 4 0.80None
Larval trachea46 ± 74 of 4 0.66Down
Larval carcass66 ± 44 of 4 0.94None
S2 cells (growing)87 ± 34 of 4 1.25Up
Whole fly69 ± 04 of 4

Looking for FBgn0037901. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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