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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037902 through 18771 annotations produced 1 hits



(CG5281):

Annotation Number : CG5281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037902
Gbrowse : chr3R:7261592-7263245 (+) // 100.0 //
Probeset : 1627884_at
Accessions : protein= NP_650076;, nucleotide= NM_141819;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0037902.
VDRC has 2 RNAi stocks for FBgn0037902 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain408 ± 64 of 414.50Up
Head115 ± 34 of 4 4.10Up
Eye173 ± 94 of 4 6.15Up
Thoracicoabdominal ganglion394 ± 104 of 414.00Up
Salivary gland7 ± 40 of 4 0.26Down
Crop13 ± 14 of 4 0.50Down
Midgut7 ± 21 of 4 0.30Down
Tubule3 ± 00 of 4 0.10Down
Hindgut11 ± 02 of 4 0.40Down
Heart7 ± 12 of 4 0.28Down
Fat body5 ± 30 of 4 0.21Down
Ovary5 ± 00 of 4 0.20Down
Testis71 ± 34 of 4 2.50Up
Male accessory glands6 ± 21 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.13Down
Mated spermatheca4 ± 10 of 4 0.15Down
Adult carcass13 ± 22 of 4 0.50Down
Larval CNS136 ± 64 of 4 4.84Up
Larval Salivary gland5 ± 30 of 4 0.20Down
Larval midgut9 ± 11 of 4 0.32Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut10 ± 13 of 4 0.36Down
Larval fat body22 ± 53 of 4 0.80None
Larval trachea6 ± 52 of 4 0.24Down
Larval carcass13 ± 04 of 4 0.48Down
S2 cells (growing)58 ± 14 of 4 2.09Up
Whole fly28 ± 24 of 4

Looking for FBgn0037902. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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