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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037906 through 18771 annotations produced 1 hits



Peptidoglycan recognition protein LB (PGRP-LB):

Annotation Number : CG14704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037906
Gbrowse : chr3R:7278562-7283742 (-) // 100.0 //
Probeset : 1630741_s_at
Accessions : protein= NP_650079; /// NP_731575; /// NP_731576;, nucleotide= NM_141822; /// NM_169392; /// NM_169393;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0004040 // amidase activity // non-traceable author statement /// 0004040 // amidase activity // inferred from electroni
FlyMine data for FBgn0037906.
BDGP gene expression has embryonic in situ data for PGRP-LB: 8 pix of staining in 1 body parts.
BioGrid reports that CG14704 interacts with CG16790 .
VDRC has 2 RNAi stocks for FBgn0037906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.20Down
Head75 134 of 4 1.30None
Eye48 84 of 4 0.80None
Thoracicoabdominal ganglion10 13 of 4 0.20Down
Salivary gland411 24 of 4 6.82Up
Crop418 124 of 4 6.90Up
Midgut601 274 of 410.00Up
Tubule15 13 of 4 0.30Down
Hindgut120 44 of 4 2.00Up
Heart147 124 of 4 2.45Up
Fat body91 174 of 4 1.52Up
Ovary11 24 of 4 0.20Down
Testis15 14 of 4 0.30Down
Male accessory glands54 24 of 4 0.90None
Virgin spermatheca94 114 of 4 1.57None
Mated spermatheca70 34 of 4 1.17None
Adult carcass96 174 of 4 1.60None
Larval CNS15 14 of 4 0.26Down
Larval Salivary gland211 174 of 4 3.50Up
Larval midgut520 164 of 4 8.62Up
Larval tubule20 24 of 4 0.30Down
Larval hindgut159 84 of 4 2.64Up
Larval fat body37 34 of 4 0.60Down
Larval trachea35 64 of 4 0.59Down
Larval carcass65 74 of 4 1.09None
S2 cells (growing)8 24 of 4 0.14Down
Whole fly60 64 of 4

Looking for FBgn0037906. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime