FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037908 through 18771 annotations produced 1 hits

dpr5 (dpr5):

Annotation Number : CG5308
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037908
Gbrowse : chr3R:7325705-7331677 (+) // 100.0 //
Probeset : 1637870_a_at
Accessions : protein= NP_650080; /// NP_731580;, nucleotide= NM_141823; /// NM_169395;
FlyMine data for FBgn0037908.
BDGP gene expression has embryonic in situ data for CG5308: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037908 available for purchase.
VDRC has 5 RNAi stocks for FBgn0037908 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	268 ± 4	4 of 4	22.90	Up
Head	58 ± 5	4 of 4	5.00	Up
Eye	18 ± 1	4 of 4	1.62	None
Thoracicoabdominal ganglion	203 ± 3	4 of 4	17.40	Up
Salivary gland	12 ± 3	2 of 4	1.10	None
Crop	6 ± 1	0 of 4	0.60	None
Midgut	5 ± 0	0 of 4	0.50	None
Tubule	5 ± 0	0 of 4	0.50	Down
Hindgut	7 ± 2	0 of 4	0.60	None
Heart	4 ± 1	0 of 4	0.40	None
Fat body	18 ± 7	3 of 4	1.59	None
Ovary	2 ± 1	0 of 4	0.20	Down
Testis	18 ± 4	4 of 4	1.60	None
Male accessory glands	10 ± 3	1 of 4	0.90	None
Virgin spermatheca	3 ± 1	0 of 4	0.28	Down
Mated spermatheca	5 ± 1	2 of 4	0.43	None
Adult carcass	15 ± 4	0 of 4	1.30	None
Larval CNS	112 ± 10	4 of 4	9.64	Up
Larval Salivary gland	9 ± 2	2 of 4	0.77	None
Larval midgut	6 ± 2	1 of 4	0.55	None
Larval tubule	4 ± 1	1 of 4	0.40	None
Larval hindgut	4 ± 1	2 of 4	0.41	None
Larval fat body	8 ± 2	2 of 4	0.70	None
Larval trachea	2 ± 2	0 of 4	0.22	Down
Larval carcass	3 ± 1	1 of 4	0.28	Down
S2 cells (growing)	3 ± 1	0 of 4	0.29	Down
Whole fly	11 ± 2	3 of 4

Looking for FBgn0037908. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720