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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037910 through 18771 annotations produced 1 hits


Annotation Number : CG14708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037910
Gbrowse : chr3R:7379910-7380528 (+) // 100.0 //
Probeset : 1641519_at
Accessions : protein= NP_650082;, nucleotide= NM_141825;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037910.
BioGrid reports that CG14708 interacts with CG7809 CG1883 CG6291 CG6719 CG8384 Dmel CG34388 .
VDRC has 2 RNAi stocks for FBgn0037910 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland1 00 of 4 0.03Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 10 of 4 0.07Down
Fat body0 00 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis536 214 of 416.00Up
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.03Down
Mated spermatheca1 10 of 4 0.06Down
Adult carcass0 00 of 4 0.00Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.10Down
Larval midgut0 00 of 4 0.02Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body90 393 of 4 2.70None
Larval trachea3 40 of 4 0.11Down
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)0 00 of 4 0.02Down
Whole fly33 14 of 4

Looking for FBgn0037910. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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