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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037912 through 18771 annotations produced 1 hits



/// scheggia (CG6783 /// sea):

Annotation Number : CG31305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037912 /// FBgn0037913
Gbrowse : chr3R:7385611-7392771 (-) // 100.0 //
Probeset : 1623518_s_at
Accessions : protein= NP_001027175; /// NP_001027176; /// NP_001027177; /// NP_001027178; /// NP_001027179; /// NP_001027180; /// NP_001027181;, nucleotide= NM_001032004; /// NM_001032005; /// NM_001032006; /// NM_001032007; /// NM_001032008; /// NM_001032009; /// NM_001032010;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from sequence o
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005371 // tricarboxylate secondary active tr
FlyMine data for FBgn0037912 /// FBgn0037913.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain495 134 of 4 0.70Down
Head913 334 of 4 1.20Up
Eye954 284 of 4 1.28Up
Thoracicoabdominal ganglion584 64 of 4 0.80Down
Salivary gland1637 624 of 4 2.20Up
Crop1108 84 of 4 1.50Up
Midgut1714 344 of 4 2.30Up
Tubule617 904 of 4 0.80None
Hindgut1208 174 of 4 1.60Up
Heart2103 854 of 4 2.83Up
Fat body2481 1644 of 4 3.34Up
Ovary502 124 of 4 0.70Down
Testis195 104 of 4 0.30Down
Male accessory glands188 94 of 4 0.30Down
Virgin spermatheca3431 1254 of 4 4.62Up
Mated spermatheca3479 1834 of 4 4.68Up
Adult carcass1772 644 of 4 2.40Up
Larval CNS432 384 of 4 0.58Down
Larval Salivary gland412 184 of 4 0.55Down
Larval midgut1421 884 of 4 1.91Up
Larval tubule130 74 of 4 0.20Down
Larval hindgut961 464 of 4 1.29Up
Larval fat body401 424 of 4 0.50Down
Larval trachea932 384 of 4 1.25Up
Larval carcass869 664 of 4 1.17None
S2 cells (growing)384 34 of 4 0.52Down
Whole fly743 264 of 4

Looking for FBgn0037912. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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