Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037916 through 18771 annotations produced 1 hits



(CG5342):

Annotation Number : CG5342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037916
Gbrowse : chr3R:7404547-7407158 (+) // 100.0 //
Probeset : 1626026_at
Accessions : protein= NP_650088;, nucleotide= NM_141831;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation
Interpro : 0016740 // transferase activity // inferred from electronic annotation
FlyMine data for FBgn0037916.
VDRC has 3 RNAi stocks for FBgn0037916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20Down
Head4 ± 10 of 4 1.00None
Eye0 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland7 ± 20 of 4 1.83None
Crop2 ± 00 of 4 0.50None
Midgut8 ± 30 of 4 2.20None
Tubule3 ± 10 of 4 0.90None
Hindgut4 ± 10 of 4 1.10None
Heart1 ± 00 of 4 0.32Down
Fat body2 ± 20 of 4 0.70None
Ovary1 ± 00 of 4 0.40Down
Testis93 ± 54 of 423.90Up
Male accessory glands2 ± 00 of 4 0.70None
Virgin spermatheca3 ± 10 of 4 0.90None
Mated spermatheca1 ± 10 of 4 0.49None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS0 ± 00 of 4 0.22Down
Larval Salivary gland5 ± 21 of 4 1.27None
Larval midgut1 ± 00 of 4 0.34Down
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.39Down
Larval fat body21 ± 72 of 4 5.40None
Larval trachea2 ± 10 of 4 0.68None
Larval carcass1 ± 00 of 4 0.26Down
S2 cells (growing)2 ± 10 of 4 0.76None
Whole fly3 ± 00 of 4

Looking for FBgn0037916. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime