Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037918 through 18771 annotations produced 3 hits



(CG6791):

Annotation Number : CG6791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037918
Gbrowse : chr3R:7411075-7415864 (-) // 100.0 //
Probeset : 1639787_at
Accessions : protein= NP_650090; /// NP_731594;, nucleotide= NM_141833; /// NM_169403;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037918.
BDGP gene expression has embryonic in situ data for CG6791: 10 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0037918 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 ± 194 of 4 3.80Up
Head106 ± 54 of 4 1.20Up
Eye121 ± 94 of 4 1.36Up
Thoracicoabdominal ganglion257 ± 174 of 4 2.90Up
Salivary gland105 ± 74 of 4 1.18None
Crop159 ± 94 of 4 1.80Up
Midgut77 ± 64 of 4 0.90None
Tubule96 ± 44 of 4 1.10None
Hindgut101 ± 44 of 4 1.10None
Heart57 ± 34 of 4 0.64Down
Fat body47 ± 84 of 4 0.53Down
Ovary257 ± 64 of 4 2.90Up
Testis55 ± 14 of 4 0.60Down
Male accessory glands113 ± 124 of 4 1.30None
Virgin spermatheca154 ± 94 of 4 1.73Up
Mated spermatheca154 ± 64 of 4 1.72Up
Adult carcass57 ± 64 of 4 0.60Down
Larval CNS604 ± 344 of 4 6.76Up
Larval Salivary gland113 ± 54 of 4 1.27Up
Larval midgut58 ± 44 of 4 0.65Down
Larval tubule74 ± 34 of 4 0.80Down
Larval hindgut104 ± 24 of 4 1.17Up
Larval fat body58 ± 44 of 4 0.70Down
Larval trachea164 ± 94 of 4 1.84Up
Larval carcass190 ± 64 of 4 2.13Up
S2 cells (growing)178 ± 74 of 4 2.00Up
Whole fly89 ± 24 of 4



(CG6791):

Annotation Number : CG6791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037918
Gbrowse : chr3R:7411075-7415864 (-) // 100.0 //
Probeset : 1635430_a_at
Accessions : protein= NP_650090; /// NP_731594;, nucleotide= NM_141833; /// NM_169403;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037918.
BDGP gene expression has embryonic in situ data for CG6791: 10 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0037918 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 34 of 4 3.50Up
Head18 ± 14 of 4 1.10None
Eye31 ± 24 of 4 1.81Up
Thoracicoabdominal ganglion17 ± 04 of 4 1.00None
Salivary gland7 ± 20 of 4 0.43Down
Crop7 ± 11 of 4 0.50Down
Midgut9 ± 20 of 4 0.60None
Tubule5 ± 00 of 4 0.30Down
Hindgut7 ± 12 of 4 0.40Down
Heart6 ± 13 of 4 0.40Down
Fat body4 ± 41 of 4 0.28Down
Ovary32 ± 14 of 4 1.90Up
Testis25 ± 24 of 4 1.50None
Male accessory glands14 ± 11 of 4 0.90None
Virgin spermatheca2 ± 00 of 4 0.17Down
Mated spermatheca2 ± 00 of 4 0.12Down
Adult carcass14 ± 41 of 4 0.80None
Larval CNS61 ± 104 of 4 3.57Up
Larval Salivary gland16 ± 33 of 4 0.94None
Larval midgut5 ± 10 of 4 0.30Down
Larval tubule7 ± 11 of 4 0.40Down
Larval hindgut9 ± 01 of 4 0.53None
Larval fat body8 ± 31 of 4 0.50None
Larval trachea17 ± 24 of 4 1.01None
Larval carcass14 ± 33 of 4 0.86None
S2 cells (growing)89 ± 24 of 4 5.22Up
Whole fly17 ± 23 of 4



(CG6791):

Annotation Number : CG6791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037918
Gbrowse : chr3R:7411419-7415864 (-) // 100.0 //
Probeset : 1629690_at
Accessions : protein= NP_650090; /// NP_731594;, nucleotide= NM_141833; /// NM_169403;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037918.
BDGP gene expression has embryonic in situ data for CG6791: 10 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0037918 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 14 of 4 3.30Up
Head47 ± 44 of 4 1.20None
Eye67 ± 64 of 4 1.72Up
Thoracicoabdominal ganglion66 ± 34 of 4 1.70Up
Salivary gland55 ± 42 of 4 1.42None
Crop37 ± 64 of 4 1.00None
Midgut33 ± 04 of 4 0.90None
Tubule30 ± 03 of 4 0.80Down
Hindgut41 ± 14 of 4 1.10None
Heart22 ± 14 of 4 0.59Down
Fat body33 ± 24 of 4 0.85None
Ovary90 ± 54 of 4 2.30Up
Testis41 ± 04 of 4 1.10None
Male accessory glands30 ± 22 of 4 0.80None
Virgin spermatheca21 ± 34 of 4 0.56Down
Mated spermatheca28 ± 34 of 4 0.72None
Adult carcass39 ± 24 of 4 1.00None
Larval CNS197 ± 214 of 4 5.04Up
Larval Salivary gland42 ± 44 of 4 1.07None
Larval midgut28 ± 14 of 4 0.72None
Larval tubule26 ± 24 of 4 0.70None
Larval hindgut37 ± 24 of 4 0.95None
Larval fat body25 ± 24 of 4 0.60None
Larval trachea65 ± 64 of 4 1.68Up
Larval carcass62 ± 34 of 4 1.59Up
S2 cells (growing)127 ± 24 of 4 3.27Up
Whole fly39 ± 44 of 4

Looking for FBgn0037918. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime