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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037920 through 18771 annotations produced 1 hits



(CG14710):

Annotation Number : CG14710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037920
Gbrowse : chr3R:7445812-7447450 (+) // 100.0 //
Probeset : 1625723_at
Accessions : protein= NP_650092;, nucleotide= NM_141835;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0037920.
BDGP gene expression has embryonic in situ data for CG14710: 4 pix of staining in 1 body parts.
Homophila reports that CG14710 is a close match (2e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
TRiP has 1 RNAi stocks for FBgn0037920 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037920 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 14 of 4 1.00None
Head46 24 of 4 0.60Down
Eye43 14 of 4 0.54Down
Thoracicoabdominal ganglion64 54 of 4 0.80Down
Salivary gland61 44 of 4 0.76Down
Crop55 44 of 4 0.70Down
Midgut42 24 of 4 0.50Down
Tubule36 24 of 4 0.50Down
Hindgut37 14 of 4 0.50Down
Heart22 24 of 4 0.27Down
Fat body38 54 of 4 0.47Down
Ovary188 14 of 4 2.30Up
Testis34 24 of 4 0.40Down
Male accessory glands42 04 of 4 0.50Down
Virgin spermatheca46 54 of 4 0.57Down
Mated spermatheca38 34 of 4 0.48Down
Adult carcass41 24 of 4 0.50Down
Larval CNS82 34 of 4 1.02None
Larval Salivary gland52 34 of 4 0.65Down
Larval midgut27 14 of 4 0.34Down
Larval tubule37 44 of 4 0.50Down
Larval hindgut30 04 of 4 0.37Down
Larval fat body41 34 of 4 0.50Down
Larval trachea42 54 of 4 0.52Down
Larval carcass40 44 of 4 0.50Down
S2 cells (growing)51 14 of 4 0.63Down
Whole fly81 34 of 4

Looking for FBgn0037920. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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