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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037924 through 18771 annotations produced 1 hits



(CG14712):

Annotation Number : CG14712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037924
Gbrowse : chr3R:7454482-7459426 (+) // 100.0 //
Probeset : 1636994_at
Accessions : protein= NP_650096;, nucleotide= NM_141839;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred
FlyMine data for FBgn0037924.
BDGP gene expression has embryonic in situ data for CG14712: 12 pix of staining in 11 body parts.
BioGrid reports that CG14712 interacts with CG30492 CG9423 .
TRiP has 1 RNAi stocks for FBgn0037924 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 44 of 4 2.30Up
Head29 44 of 4 1.40None
Eye20 24 of 4 0.98None
Thoracicoabdominal ganglion51 74 of 4 2.40Up
Salivary gland48 44 of 4 2.28Up
Crop74 44 of 4 3.50Up
Midgut24 24 of 4 1.10None
Tubule22 03 of 4 1.10None
Hindgut55 44 of 4 2.60Up
Heart23 34 of 4 1.11None
Fat body50 84 of 4 2.40Up
Ovary36 14 of 4 1.70Up
Testis7 04 of 4 0.30Down
Male accessory glands48 14 of 4 2.30Up
Virgin spermatheca39 34 of 4 1.89Up
Mated spermatheca45 24 of 4 2.14Up
Adult carcass21 24 of 4 1.00None
Larval CNS72 144 of 4 3.40Up
Larval Salivary gland58 54 of 4 2.77Up
Larval midgut31 04 of 4 1.46Up
Larval tubule33 44 of 4 1.60None
Larval hindgut41 14 of 4 1.95Up
Larval fat body26 24 of 4 1.20None
Larval trachea31 74 of 4 1.50None
Larval carcass38 34 of 4 1.80Up
S2 cells (growing)38 14 of 4 1.80Up
Whole fly21 14 of 4

Looking for FBgn0037924. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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