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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037930 through 18771 annotations produced 1 hits



(CG14715):

Annotation Number : CG14715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037930
Gbrowse : chr3R:7499940-7500654 (+) // 100.0 //
Probeset : 1625141_at
Accessions : protein= NP_650101;, nucleotide= NM_141844;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0037930.
BDGP gene expression has embryonic in situ data for CG14715: 12 pix of staining in 5 body parts.
Homophila reports that CG14715 is a close match (2e-15) to human gene FKBP5;FKBP51 (NP_004108), a gene associated with {Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3).
BioGrid reports that CG14715 interacts with CG15067 .
VDRC has 3 RNAi stocks for FBgn0037930 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 24 of 4 0.70None
Head189 ± 144 of 4 1.10None
Eye119 ± 94 of 4 0.70None
Thoracicoabdominal ganglion103 ± 64 of 4 0.60Down
Salivary gland87 ± 64 of 4 0.51Down
Crop56 ± 44 of 4 0.30Down
Midgut184 ± 124 of 4 1.10None
Tubule62 ± 34 of 4 0.40Down
Hindgut76 ± 14 of 4 0.40Down
Heart193 ± 124 of 4 1.13None
Fat body361 ± 804 of 4 2.11Up
Ovary223 ± 234 of 4 1.30None
Testis41 ± 44 of 4 0.20Down
Male accessory glands139 ± 94 of 4 0.80None
Virgin spermatheca160 ± 134 of 4 0.93None
Mated spermatheca192 ± 254 of 4 1.12None
Adult carcass160 ± 184 of 4 0.90None
Larval CNS362 ± 1054 of 4 2.11Up
Larval Salivary gland124 ± 304 of 4 0.73None
Larval midgut96 ± 122 of 4 0.56Down
Larval tubule128 ± 114 of 4 0.70None
Larval hindgut86 ± 114 of 4 0.50Down
Larval fat body390 ± 224 of 4 2.30Up
Larval trachea168 ± 464 of 4 0.98None
Larval carcass81 ± 164 of 4 0.48Down
S2 cells (growing)1221 ± 324 of 4 7.12Up
Whole fly171 ± 204 of 4

Looking for FBgn0037930. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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