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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037933 through 18771 annotations produced 1 hits



Heme oxygenase (Ho):

Annotation Number : CG14716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037933
Gbrowse : chr3R:7505480-7506698 (+) // 100.0 //
Probeset : 1640462_at
Accessions : protein= NP_524321;, nucleotide= NM_079597;
Interpro : 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0004392 // heme oxygenase (decyclizin
FlyMine data for FBgn0037933.
BDGP gene expression has embryonic in situ data for Ho: 4 pix of staining in 1 body parts.
Homophila reports that CG14716 is a close match (5e-13) to human gene HMOX1 (NP_002124), a gene associated with Heme oxygenase-1 deficiency (3);{Pulmonary disease, chronic obstructive, susceptibility to}, 606963 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain437 ± 54 of 4 1.30Up
Head346 ± 44 of 4 1.10Up
Eye292 ± 44 of 4 0.89Down
Thoracicoabdominal ganglion560 ± 174 of 4 1.70Up
Salivary gland313 ± 54 of 4 0.96None
Crop268 ± 84 of 4 0.80Down
Midgut266 ± 94 of 4 0.80Down
Tubule329 ± 214 of 4 1.00None
Hindgut364 ± 14 of 4 1.10Up
Heart433 ± 134 of 4 1.33Up
Fat body494 ± 304 of 4 1.51Up
Ovary398 ± 14 of 4 1.20Up
Testis656 ± 64 of 4 2.00Up
Male accessory glands255 ± 74 of 4 0.80Down
Virgin spermatheca694 ± 414 of 4 2.13Up
Mated spermatheca540 ± 254 of 4 1.66Up
Adult carcass445 ± 144 of 4 1.40Up
Larval CNS214 ± 34 of 4 0.66Down
Larval Salivary gland167 ± 34 of 4 0.51Down
Larval midgut903 ± 2154 of 4 2.77None
Larval tubule1567 ± 474 of 4 4.80Up
Larval hindgut505 ± 424 of 4 1.55Up
Larval fat body1166 ± 1404 of 4 3.60Up
Larval trachea316 ± 374 of 4 0.97None
Larval carcass740 ± 1814 of 4 2.27None
S2 cells (growing)227 ± 74 of 4 0.70Down
Whole fly326 ± 44 of 4

Looking for FBgn0037933. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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