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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037934 through 18771 annotations produced 1 hits



(CG6830):

Annotation Number : CG6830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037934
Gbrowse : chr3R:7506690-7510062 (-) // 100.0 //
Probeset : 1624692_at
Accessions : protein= NP_650103;, nucleotide= NM_141846;
FlyMine data for FBgn0037934.
BDGP gene expression has embryonic in situ data for CG6830: 12 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0037934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 22 of 4 0.10Down
Head94 44 of 4 0.60None
Eye85 34 of 4 0.54None
Thoracicoabdominal ganglion9 20 of 4 0.10Down
Salivary gland3 00 of 4 0.02Down
Crop5 20 of 4 0.00Down
Midgut1984 744 of 412.40Up
Tubule406 544 of 4 2.50Up
Hindgut829 444 of 4 5.20Up
Heart10 12 of 4 0.07Down
Fat body13 41 of 4 0.08Down
Ovary22 14 of 4 0.10Down
Testis60 24 of 4 0.40Down
Male accessory glands19 51 of 4 0.10Down
Virgin spermatheca38 34 of 4 0.24Down
Mated spermatheca43 54 of 4 0.27Down
Adult carcass84 44 of 4 0.50None
Larval CNS9 13 of 4 0.06Down
Larval Salivary gland14 22 of 4 0.09Down
Larval midgut1408 1264 of 4 8.80Up
Larval tubule35 94 of 4 0.20Down
Larval hindgut340 494 of 4 2.13Up
Larval fat body10 10 of 4 0.10Down
Larval trachea78 264 of 4 0.49Down
Larval carcass28 14 of 4 0.18Down
S2 cells (growing)63 24 of 4 0.39Down
Whole fly160 264 of 4

Looking for FBgn0037934. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime