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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037936 through 18771 annotations produced 1 hits



(CG6908):

Annotation Number : CG6908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037936
Gbrowse : chr3R:7514098-7515745 (-) // 100.0 //
Probeset : 1622946_at
Accessions : protein= NP_650105;, nucleotide= NM_141848;
FlyMine data for FBgn0037936.
VDRC has 2 RNAi stocks for FBgn0037936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 24 of 4 0.30Down
Head602 ± 394 of 4 4.80Up
Eye518 ± 834 of 4 4.16Up
Thoracicoabdominal ganglion35 ± 14 of 4 0.30Down
Salivary gland13 ± 52 of 4 0.11Down
Crop41 ± 24 of 4 0.30Down
Midgut983 ± 644 of 4 7.90Up
Tubule1136 ± 2474 of 4 9.10Up
Hindgut459 ± 154 of 4 3.70Up
Heart100 ± 44 of 4 0.81None
Fat body142 ± 144 of 4 1.14None
Ovary18 ± 24 of 4 0.10Down
Testis25 ± 24 of 4 0.20Down
Male accessory glands11 ± 42 of 4 0.10Down
Virgin spermatheca218 ± 64 of 4 1.75Up
Mated spermatheca99 ± 114 of 4 0.80None
Adult carcass258 ± 104 of 4 2.10Up
Larval CNS15 ± 54 of 4 0.13Down
Larval Salivary gland14 ± 14 of 4 0.12Down
Larval midgut478 ± 834 of 4 3.83Up
Larval tubule781 ± 134 of 4 6.30Up
Larval hindgut251 ± 664 of 4 2.02None
Larval fat body256 ± 214 of 4 2.10Up
Larval trachea14 ± 64 of 4 0.11Down
Larval carcass21 ± 22 of 4 0.17Down
S2 cells (growing)5 ± 01 of 4 0.05Down
Whole fly124 ± 84 of 4

Looking for FBgn0037936. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime