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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037937 through 18771 annotations produced 1 hits



ntwist (Fer3):

Annotation Number : CG6913
Flybase ID : FBgn0037937
Gbrowse : chr3R:7519131-7519999 (-) // 100.0 //
Probeset : 1633897_at
Accessions : protein= NP_524322;, nucleotide= NM_079598;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0037937.
Homophila reports that CG6913 is a close match (3e-13) to human gene PTF1A (NP_835455), a gene associated with Diabetes mellitus, permanent neonatal, with cerebellar agenesis, 609069 (3).
TRiP has 1 RNAi stocks for FBgn0037937 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 1.90None
Head8 10 of 4 1.50None
Eye3 00 of 4 0.60None
Thoracicoabdominal ganglion20 32 of 4 4.00Up
Salivary gland24 50 of 4 4.60Up
Crop8 20 of 4 1.70None
Midgut7 00 of 4 1.40None
Tubule5 10 of 4 1.10None
Hindgut7 20 of 4 1.50None
Heart2 10 of 4 0.51None
Fat body7 01 of 4 1.50None
Ovary5 00 of 4 1.00None
Testis3 10 of 4 0.60None
Male accessory glands12 40 of 4 2.40None
Virgin spermatheca8 12 of 4 1.55None
Mated spermatheca11 33 of 4 2.14None
Adult carcass8 20 of 4 1.60None
Larval CNS51 54 of 4 9.82Up
Larval Salivary gland7 10 of 4 1.41None
Larval midgut4 10 of 4 0.88None
Larval tubule7 20 of 4 1.40None
Larval hindgut4 00 of 4 0.92None
Larval fat body7 10 of 4 1.40None
Larval trachea2 20 of 4 0.51None
Larval carcass4 10 of 4 0.87None
S2 cells (growing)3 10 of 4 0.76None
Whole fly5 10 of 4

Looking for FBgn0037937. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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