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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037941 through 18771 annotations produced 1 hits



(CG12594):

Annotation Number : CG12594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037941
Gbrowse : chr3R:7552944-7557725 (+) // 100.0 //
Probeset : 1637892_at
Accessions : protein= NP_650109;, nucleotide= NM_141852;
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation
FlyMine data for FBgn0037941.
TRiP has 1 RNAi stocks for FBgn0037941 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037941 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 34 of 416.70Up
Head39 ± 24 of 4 4.40Up
Eye9 ± 13 of 4 1.03None
Thoracicoabdominal ganglion152 ± 84 of 417.10Up
Salivary gland7 ± 10 of 4 0.78None
Crop4 ± 21 of 4 0.50None
Midgut2 ± 10 of 4 0.30Down
Tubule3 ± 10 of 4 0.40Down
Hindgut5 ± 00 of 4 0.60Down
Heart5 ± 11 of 4 0.60None
Fat body3 ± 20 of 4 0.37Down
Ovary1 ± 00 of 4 0.20Down
Testis8 ± 04 of 4 0.90None
Male accessory glands5 ± 10 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.34Down
Mated spermatheca2 ± 10 of 4 0.25Down
Adult carcass11 ± 20 of 4 1.30None
Larval CNS68 ± 74 of 4 7.66Up
Larval Salivary gland3 ± 10 of 4 0.35Down
Larval midgut1 ± 00 of 4 0.18Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.37Down
Larval fat body2 ± 00 of 4 0.30Down
Larval trachea2 ± 20 of 4 0.32Down
Larval carcass2 ± 00 of 4 0.26Down
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly8 ± 12 of 4

Looking for FBgn0037941. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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