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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037942 through 18771 annotations produced 1 hits



(CG14721):

Annotation Number : CG14721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037942
Gbrowse : chr3R:7561168-7562565 (+) // 100.0 //
Probeset : 1632487_at
Accessions : protein= NP_650110;, nucleotide= NM_141853;
Interpro : 0004788 // thiamin diphosphokinase activity // inferred from sequence or structural similarity /// 0004788 // thiamin di
FlyMine data for FBgn0037942.
BDGP gene expression has embryonic in situ data for CG14721: 12 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0037942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 24 of 4 1.20Up
Head113 104 of 4 0.70Down
Eye95 54 of 4 0.58Down
Thoracicoabdominal ganglion223 84 of 4 1.40Up
Salivary gland182 114 of 4 1.12None
Crop99 54 of 4 0.60Down
Midgut213 164 of 4 1.30None
Tubule96 34 of 4 0.60Down
Hindgut114 44 of 4 0.70Down
Heart127 14 of 4 0.78Down
Fat body159 104 of 4 0.98None
Ovary171 74 of 4 1.10None
Testis857 124 of 4 5.30Up
Male accessory glands236 144 of 4 1.50Up
Virgin spermatheca135 44 of 4 0.83Down
Mated spermatheca163 104 of 4 1.01None
Adult carcass126 84 of 4 0.80Down
Larval CNS106 134 of 4 0.65Down
Larval Salivary gland181 184 of 4 1.11None
Larval midgut106 74 of 4 0.65Down
Larval tubule74 54 of 4 0.50Down
Larval hindgut91 94 of 4 0.56Down
Larval fat body252 44 of 4 1.60Up
Larval trachea145 124 of 4 0.89None
Larval carcass96 74 of 4 0.59Down
S2 cells (growing)123 44 of 4 0.76Down
Whole fly162 34 of 4

Looking for FBgn0037942. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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