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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037956 through 18771 annotations produced 1 hits



connectin-like (CG6959):

Annotation Number : CG6959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037956
Gbrowse : chr3R:7648430-7650629 (-) // 100.0 //
Probeset : 1633407_at
Accessions : protein= NP_001138037; /// NP_650122;, nucleotide= NM_001144565; /// NM_141865;
FlyMine data for FBgn0037956.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 ± 54 of 4 2.50Up
Head145 ± 34 of 4 2.70Up
Eye114 ± 24 of 4 2.11Up
Thoracicoabdominal ganglion90 ± 04 of 4 1.70Up
Salivary gland408 ± 94 of 4 7.53Up
Crop434 ± 154 of 4 8.00Up
Midgut16 ± 04 of 4 0.30Down
Tubule18 ± 14 of 4 0.30Down
Hindgut203 ± 24 of 4 3.70Up
Heart72 ± 74 of 4 1.34None
Fat body129 ± 84 of 4 2.39Up
Ovary18 ± 04 of 4 0.30Down
Testis39 ± 24 of 4 0.70Down
Male accessory glands111 ± 44 of 4 2.10Up
Virgin spermatheca29 ± 14 of 4 0.54Down
Mated spermatheca40 ± 44 of 4 0.75Down
Adult carcass148 ± 64 of 4 2.70Up
Larval CNS112 ± 124 of 4 2.07Up
Larval Salivary gland68 ± 14 of 4 1.26Up
Larval midgut22 ± 04 of 4 0.41Down
Larval tubule13 ± 14 of 4 0.20Down
Larval hindgut146 ± 34 of 4 2.70Up
Larval fat body10 ± 22 of 4 0.20Down
Larval trachea717 ± 274 of 413.23Up
Larval carcass189 ± 64 of 4 3.49Up
S2 cells (growing)2 ± 10 of 4 0.05Down
Whole fly54 ± 34 of 4

Looking for FBgn0037956. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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