FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037960 through 18771 annotations produced 1 hits

Mth-like 5 (mthl5):

Annotation Number : CG6965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037960
Gbrowse : chr3R:7709659-7712887 (-) // 100.0 //
Probeset : 1639045_at
Accessions : protein= NP_650126;, nucleotide= NM_141869;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0037960.
BDGP gene expression has embryonic in situ data for CG6965: 36 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0037960 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037960 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 1	4 of 4	0.50	Down
Head	39 ± 4	4 of 4	1.30	None
Eye	67 ± 3	4 of 4	2.24	Up
Thoracicoabdominal ganglion	13 ± 1	4 of 4	0.50	Down
Salivary gland	53 ± 10	4 of 4	1.77	None
Crop	60 ± 3	4 of 4	2.00	Up
Midgut	12 ± 1	0 of 4	0.40	Down
Tubule	14 ± 1	3 of 4	0.50	Down
Hindgut	22 ± 0	4 of 4	0.70	Down
Heart	18 ± 1	4 of 4	0.60	Down
Fat body	35 ± 2	4 of 4	1.17	Up
Ovary	49 ± 2	4 of 4	1.60	Up
Testis	22 ± 1	4 of 4	0.70	Down
Male accessory glands	30 ± 5	4 of 4	1.00	None
Virgin spermatheca	56 ± 6	4 of 4	1.89	Up
Mated spermatheca	37 ± 6	4 of 4	1.23	None
Adult carcass	39 ± 4	4 of 4	1.30	None
Larval CNS	82 ± 5	4 of 4	2.74	Up
Larval Salivary gland	78 ± 6	4 of 4	2.60	Up
Larval midgut	10 ± 2	1 of 4	0.36	Down
Larval tubule	4 ± 2	2 of 4	0.20	Down
Larval hindgut	39 ± 4	4 of 4	1.32	None
Larval fat body	58 ± 6	4 of 4	1.90	Up
Larval trachea	127 ± 22	4 of 4	4.23	Up
Larval carcass	61 ± 8	4 of 4	2.04	Up
S2 cells (growing)	117 ± 4	4 of 4	3.90	Up
Whole fly	30 ± 0	4 of 4

Looking for FBgn0037960. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720