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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037962 through 18771 annotations produced 1 hits



(CG6971):

Annotation Number : CG6971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037962
Gbrowse : chr3R:7718030-7719019 (-) // 100.0 //
Probeset : 1627798_at
Accessions : protein= NP_650128;, nucleotide= NM_141871;
Pathway : 0030286 // dynein complex // inferred from sequence or structural similarity /// 0030286 // dynein complex // inferred f
Interpro : "0003774 // motor activity // inferred from electronic annotation /// 0042623 // ATPase activity
FlyMine data for FBgn0037962.
VDRC has 5 RNAi stocks for FBgn0037962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head5 20 of 4 0.10Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion5 00 of 4 0.10Down
Salivary gland4 00 of 4 0.08Down
Crop4 10 of 4 0.10Down
Midgut7 20 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut4 00 of 4 0.10Down
Heart7 11 of 4 0.14Down
Fat body7 20 of 4 0.14Down
Ovary1 00 of 4 0.00Down
Testis707 174 of 413.30Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca6 11 of 4 0.13Down
Mated spermatheca4 00 of 4 0.08Down
Adult carcass5 10 of 4 0.10Down
Larval CNS3 21 of 4 0.06Down
Larval Salivary gland4 20 of 4 0.08Down
Larval midgut5 10 of 4 0.10Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut4 20 of 4 0.09Down
Larval fat body107 584 of 4 2.00None
Larval trachea9 52 of 4 0.17Down
Larval carcass3 10 of 4 0.07Down
S2 cells (growing)3 00 of 4 0.06Down
Whole fly53 14 of 4

Looking for FBgn0037962. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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