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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037963 through 18771 annotations produced 1 hits



Cad87A (Cad87A):

Annotation Number : CG6977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037963
Gbrowse : chr3R:7719224-7727915 (-) // 100.0 //
Probeset : 1641575_at
Accessions : protein= NP_731649;, nucleotide= NM_169440;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0037963.
Homophila reports that CG6977 is a close match (1e-11) to human gene ARVC10;ARVD10;DSG2 (NP_001934), a gene associated with Arrhythmogenic right ventricular dysplasia, familial, 10, 610193 (3).
TRiP has 1 RNAi stocks for FBgn0037963 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037963 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 54 of 4 1.80Up
Head165 94 of 4 1.00None
Eye213 144 of 4 1.33None
Thoracicoabdominal ganglion512 214 of 4 3.20Up
Salivary gland83 114 of 4 0.52Down
Crop80 44 of 4 0.50Down
Midgut15 14 of 4 0.10Down
Tubule20 24 of 4 0.10Down
Hindgut99 34 of 4 0.60None
Heart94 104 of 4 0.59None
Fat body88 184 of 4 0.55Down
Ovary456 124 of 4 2.80Up
Testis12 04 of 4 0.10Down
Male accessory glands119 74 of 4 0.70None
Virgin spermatheca772 574 of 4 4.82Up
Mated spermatheca667 954 of 4 4.16Up
Adult carcass99 74 of 4 0.60None
Larval CNS266 134 of 4 1.66Up
Larval Salivary gland86 74 of 4 0.54Down
Larval midgut15 24 of 4 0.09Down
Larval tubule61 54 of 4 0.40Down
Larval hindgut177 54 of 4 1.11None
Larval fat body23 24 of 4 0.10Down
Larval trachea195 234 of 4 1.22None
Larval carcass323 314 of 4 2.02Up
S2 cells (growing)47 24 of 4 0.30Down
Whole fly160 224 of 4

Looking for FBgn0037963. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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