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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037964 through 18771 annotations produced 2 hits



/// (CG14731 /// CG2921):

Annotation Number : CG2921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034689
Gbrowse : chr2R:17961041-17962842 (-) // 100.0 //
Probeset : 1632065_at
Accessions : protein= NP_611635;, nucleotide= NM_137791;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0034689.
BDGP gene expression has embryonic in situ data for CG2921: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034689 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 04 of 4 1.10None
Head64 14 of 4 0.60Down
Eye73 44 of 4 0.71Down
Thoracicoabdominal ganglion112 24 of 4 1.10None
Salivary gland47 84 of 4 0.46Down
Crop52 64 of 4 0.50Down
Midgut35 14 of 4 0.40Down
Tubule75 44 of 4 0.70Down
Hindgut40 24 of 4 0.40Down
Heart36 24 of 4 0.36Down
Fat body25 44 of 4 0.25Down
Ovary107 34 of 4 1.00None
Testis749 74 of 4 7.30Up
Male accessory glands53 34 of 4 0.50Down
Virgin spermatheca34 24 of 4 0.34Down
Mated spermatheca48 34 of 4 0.48Down
Adult carcass40 34 of 4 0.40Down
Larval CNS82 54 of 4 0.80Down
Larval Salivary gland35 14 of 4 0.34Down
Larval midgut25 34 of 4 0.25Down
Larval tubule52 44 of 4 0.50Down
Larval hindgut36 24 of 4 0.35Down
Larval fat body91 294 of 4 0.90None
Larval trachea31 84 of 4 0.31Down
Larval carcass35 24 of 4 0.35Down
S2 cells (growing)66 14 of 4 0.65Down
Whole fly102 64 of 4



(CG14731):

Annotation Number : CG14731
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037964
Gbrowse : chr3R:7756983-7759307 (+) // 100.0 //
Probeset : 1625933_at
Accessions : protein= NP_650130;, nucleotide= NM_141873;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0037964.
BDGP gene expression has embryonic in situ data for CG14731: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head3 10 of 4 0.30Down
Eye2 10 of 4 0.21Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland8 30 of 4 0.70None
Crop2 10 of 4 0.20Down
Midgut2 10 of 4 0.20Down
Tubule4 00 of 4 0.40Down
Hindgut2 00 of 4 0.20Down
Heart0 00 of 4 0.04Down
Fat body2 20 of 4 0.23Down
Ovary2 00 of 4 0.20Down
Testis135 54 of 411.00Up
Male accessory glands6 00 of 4 0.50Down
Virgin spermatheca3 00 of 4 0.27Down
Mated spermatheca2 10 of 4 0.24Down
Adult carcass3 10 of 4 0.30Down
Larval CNS3 00 of 4 0.27Down
Larval Salivary gland2 10 of 4 0.18Down
Larval midgut4 10 of 4 0.35Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut5 00 of 4 0.48Down
Larval fat body31 142 of 4 2.60None
Larval trachea1 00 of 4 0.15Down
Larval carcass3 00 of 4 0.31Down
S2 cells (growing)1 00 of 4 0.13Down
Whole fly12 13 of 4

Looking for FBgn0037964. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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