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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037970 through 18771 annotations produced 1 hits


(CG12201):

Annotation Number : CG12201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037970
Gbrowse : chr3R:7797415-7798627 (+) // 100.0 //
Probeset : 1623447_a_at
Accessions : protein= NP_001138038; /// NP_731657;, nucleotide= NM_001144566; /// NM_169443;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0037970.
Homophila reports that CG12201 is a close match (3e-11) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
TRiP has 1 RNAi stocks for FBgn0037970 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.10Down
Crop2 ± 10 of 4 0.00Down
Midgut5 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 10 of 4 0.03Down
Fat body1 ± 00 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis762 ± 464 of 414.80Up
Male accessory glands64 ± 24 of 4 1.30Up
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut4 ± 10 of 4 0.09Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body32 ± 182 of 4 0.60None
Larval trachea3 ± 40 of 4 0.08Down
Larval carcass1 ± 10 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly51 ± 44 of 4

Looking for FBgn0037970. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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