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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037972 through 18771 annotations produced 1 hits



(CG10005):

Annotation Number : CG10005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037972
Gbrowse : chr3R:7800876-7802912 (-) // 100.0 //
Probeset : 1640658_at
Accessions : protein= NP_650137;, nucleotide= NM_141880;
FlyMine data for FBgn0037972.
VDRC has 3 RNAi stocks for FBgn0037972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.40None
Head3 20 of 4 0.40None
Eye4 10 of 4 0.51None
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland15 20 of 4 1.88None
Crop7 20 of 4 0.90None
Midgut24 10 of 4 2.90Up
Tubule1 00 of 4 0.20Down
Hindgut9 00 of 4 1.20None
Heart3 10 of 4 0.46None
Fat body1 00 of 4 0.17Down
Ovary7 10 of 4 0.90None
Testis8 20 of 4 1.00None
Male accessory glands3 00 of 4 0.40Down
Virgin spermatheca2 00 of 4 0.27Down
Mated spermatheca2 00 of 4 0.25Down
Adult carcass3 10 of 4 0.40Down
Larval CNS10 20 of 4 1.22None
Larval Salivary gland6 20 of 4 0.73None
Larval midgut12 20 of 4 1.45None
Larval tubule2 00 of 4 0.20Down
Larval hindgut238 124 of 428.16Up
Larval fat body35 91 of 4 4.20None
Larval trachea398 234 of 447.14Up
Larval carcass104 64 of 412.39Up
S2 cells (growing)2 00 of 4 0.34Down
Whole fly8 10 of 4

Looking for FBgn0037972. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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