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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037974 through 18771 annotations produced 1 hits



(CG12224):

Annotation Number : CG12224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037974
Gbrowse : chr3R:7806553-7807743 (-) // 100.0 //
Probeset : 1639971_at
Accessions : protein= NP_650139;, nucleotide= NM_141882;
Interpro : 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase acti
FlyMine data for FBgn0037974.
BDGP gene expression has embryonic in situ data for CG12224: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.30Down
Head11 12 of 4 1.10None
Eye8 13 of 4 0.81None
Thoracicoabdominal ganglion6 20 of 4 0.60None
Salivary gland6 20 of 4 0.68None
Crop5 10 of 4 0.50None
Midgut68 64 of 4 6.80Up
Tubule17 13 of 4 1.80Up
Hindgut7 21 of 4 0.70None
Heart20 14 of 4 2.05Up
Fat body38 04 of 4 3.85Up
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.20Down
Male accessory glands6 21 of 4 0.70None
Virgin spermatheca39 24 of 4 3.92Up
Mated spermatheca34 24 of 4 3.46Up
Adult carcass22 33 of 4 2.30Up
Larval CNS5 10 of 4 0.50None
Larval Salivary gland2 00 of 4 0.21Down
Larval midgut21 43 of 4 2.19None
Larval tubule6 11 of 4 0.70None
Larval hindgut5 10 of 4 0.51None
Larval fat body29 24 of 4 3.00Up
Larval trachea6 21 of 4 0.62None
Larval carcass4 10 of 4 0.41None
S2 cells (growing)5 03 of 4 0.56None
Whole fly10 11 of 4

Looking for FBgn0037974. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime