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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037976 through 18771 annotations produced 1 hits



Tachykinin (Tk):

Annotation Number : CG14734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037976
Gbrowse : chr3R:7819913-7831194 (-) // 100.0 //
Probeset : 1633651_at
Accessions : protein= NP_650141;, nucleotide= NM_141884;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005102 // receptor binding // non-traceable author statement /// 0005184 // neuropeptide hormone activity // inferred f
FlyMine data for FBgn0037976.
BDGP gene expression has embryonic in situ data for Tk: 4 pix of staining in 1 body parts.
BioGrid reports that CG14734 interacts with CG6904 CG6866 .
TRiP has 1 RNAi stocks for FBgn0037976 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037976 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain694 ± 354 of 420.10Up
Head149 ± 94 of 4 4.30Up
Eye26 ± 44 of 4 0.76None
Thoracicoabdominal ganglion114 ± 34 of 4 3.30Up
Salivary gland7 ± 30 of 4 0.21Down
Crop4 ± 01 of 4 0.10Down
Midgut356 ± 84 of 410.30Up
Tubule11 ± 61 of 4 0.30Down
Hindgut137 ± 74 of 4 4.00Up
Heart3 ± 10 of 4 0.11Down
Fat body5 ± 10 of 4 0.15Down
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 01 of 4 0.14Down
Mated spermatheca3 ± 11 of 4 0.09Down
Adult carcass3 ± 11 of 4 0.10Down
Larval CNS64 ± 154 of 4 1.86Up
Larval Salivary gland3 ± 10 of 4 0.10Down
Larval midgut93 ± 64 of 4 2.71Up
Larval tubule5 ± 21 of 4 0.20Down
Larval hindgut320 ± 564 of 4 9.28Up
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea4 ± 21 of 4 0.13Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 03 of 4 0.11Down
Whole fly34 ± 44 of 4

Looking for FBgn0037976. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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