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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037978 through 18771 annotations produced 1 hits



(KLHL18):

Annotation Number : CG3571
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037978
Gbrowse : chr3R:7833831-7836152 (-) // 100.0 //
Probeset : 1631045_a_at
Accessions : protein= NP_650143; /// NP_731664;, nucleotide= NM_141886; /// NM_169446;
Pathway : thorax closure // inferred from mutant phenotype"
Interpro : 0031463 // Cul3-RING ubiquitin ligase complex // inferred from genetic interaction /// 0031463 // Cul3-RING ubiquitin li
FlyMine data for FBgn0037978.
Homophila reports that CG3571 is a close match (2e-44) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
TRiP has 1 RNAi stocks for FBgn0037978 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 34 of 4 3.80Up
Head110 24 of 4 1.80Up
Eye97 24 of 4 1.59Up
Thoracicoabdominal ganglion282 114 of 4 4.60Up
Salivary gland71 34 of 4 1.16None
Crop51 44 of 4 0.80None
Midgut65 64 of 4 1.10None
Tubule92 24 of 4 1.50Up
Hindgut50 14 of 4 0.80Down
Heart81 64 of 4 1.31Up
Fat body95 64 of 4 1.55Up
Ovary101 14 of 4 1.70Up
Testis86 24 of 4 1.40Up
Male accessory glands101 34 of 4 1.60Up
Virgin spermatheca100 24 of 4 1.63Up
Mated spermatheca99 24 of 4 1.62Up
Adult carcass78 04 of 4 1.30Up
Larval CNS162 84 of 4 2.63Up
Larval Salivary gland69 24 of 4 1.12None
Larval midgut63 24 of 4 1.03None
Larval tubule83 44 of 4 1.30Up
Larval hindgut71 34 of 4 1.15None
Larval fat body564 454 of 4 9.10Up
Larval trachea82 54 of 4 1.34Up
Larval carcass153 284 of 4 2.50Up
S2 cells (growing)110 24 of 4 1.79Up
Whole fly61 24 of 4

Looking for FBgn0037978. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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