FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037979 through 18771 annotations produced 1 hits

(CG3532):

Annotation Number : CG3532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037979
Gbrowse : chr3R:7836503-7840173 (+) // 100.0 //
Probeset : 1637022_at
Accessions : protein= NP_001097755;, nucleotide= NM_001104285;
FlyMine data for FBgn0037979.
TRiP has 1 RNAi stocks for FBgn0037979 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037979 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 1	4 of 4	1.00	None
Head	46 ± 3	4 of 4	0.90	None
Eye	36 ± 2	2 of 4	0.71	Down
Thoracicoabdominal ganglion	44 ± 2	4 of 4	0.90	None
Salivary gland	160 ± 5	4 of 4	3.11	Up
Crop	70 ± 2	4 of 4	1.40	Up
Midgut	50 ± 2	3 of 4	1.00	None
Tubule	46 ± 2	4 of 4	0.90	Down
Hindgut	54 ± 4	4 of 4	1.10	None
Heart	34 ± 1	4 of 4	0.68	Down
Fat body	55 ± 6	4 of 4	1.08	None
Ovary	92 ± 2	4 of 4	1.80	Up
Testis	133 ± 8	4 of 4	2.60	Up
Male accessory glands	108 ± 5	4 of 4	2.10	Up
Virgin spermatheca	23 ± 1	0 of 4	0.46	Down
Mated spermatheca	24 ± 2	0 of 4	0.48	Down
Adult carcass	47 ± 1	4 of 4	0.90	None
Larval CNS	42 ± 2	4 of 4	0.82	Down
Larval Salivary gland	125 ± 5	4 of 4	2.43	Up
Larval midgut	79 ± 1	1 of 4	1.54	Up
Larval tubule	96 ± 2	4 of 4	1.90	Up
Larval hindgut	71 ± 4	4 of 4	1.38	Up
Larval fat body	78 ± 5	4 of 4	1.50	Up
Larval trachea	35 ± 2	4 of 4	0.69	Down
Larval carcass	60 ± 3	4 of 4	1.17	None
S2 cells (growing)	90 ± 2	4 of 4	1.76	Up
Whole fly	51 ± 2	4 of 4

Looking for FBgn0037979. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720