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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037980 through 18771 annotations produced 1 hits



(CG3313):

Annotation Number : CG3313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037980
Gbrowse : chr3R:7840662-7842753 (-) // 100.0 //
Probeset : 1627707_at
Accessions : protein= NP_650145;, nucleotide= NM_141888;
FlyMine data for FBgn0037980.
BDGP gene expression has embryonic in situ data for CG3313: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 34 of 4 0.50Down
Head29 ± 14 of 4 0.30Down
Eye33 ± 14 of 4 0.39Down
Thoracicoabdominal ganglion40 ± 44 of 4 0.50Down
Salivary gland49 ± 74 of 4 0.57Down
Crop45 ± 24 of 4 0.50Down
Midgut44 ± 14 of 4 0.50Down
Tubule35 ± 14 of 4 0.40Down
Hindgut30 ± 24 of 4 0.40Down
Heart25 ± 04 of 4 0.29Down
Fat body24 ± 44 of 4 0.29Down
Ovary189 ± 84 of 4 2.20Up
Testis178 ± 34 of 4 2.10Up
Male accessory glands35 ± 44 of 4 0.40Down
Virgin spermatheca20 ± 21 of 4 0.24Down
Mated spermatheca24 ± 11 of 4 0.29Down
Adult carcass29 ± 22 of 4 0.30Down
Larval CNS71 ± 54 of 4 0.83None
Larval Salivary gland45 ± 33 of 4 0.52Down
Larval midgut66 ± 34 of 4 0.77Down
Larval tubule44 ± 24 of 4 0.50Down
Larval hindgut34 ± 04 of 4 0.40Down
Larval fat body65 ± 153 of 4 0.80None
Larval trachea41 ± 54 of 4 0.48Down
Larval carcass48 ± 34 of 4 0.56Down
S2 cells (growing)42 ± 14 of 4 0.49Down
Whole fly86 ± 54 of 4

Looking for FBgn0037980. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime