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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037985 through 18771 annotations produced 1 hits



CG14735 (ssp5):

Annotation Number : CG14735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037985
Gbrowse : chr3R:7858863-7861249 (+) // 100.0 //
Probeset : 1631324_at
Accessions : protein= NP_650149;, nucleotide= NM_141892;
FlyMine data for FBgn0037985.
BDGP gene expression has embryonic in situ data for CG14735: 4 pix of staining in 1 body parts.
BioGrid reports that CG14735 interacts with CG3953 .
VDRC has 2 RNAi stocks for FBgn0037985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head5 ± 20 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 10 of 4 0.00Down
Hindgut5 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body4 ± 20 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis1749 ± 644 of 4 9.70Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass10 ± 30 of 4 0.10Down
Larval CNS3 ± 00 of 4 0.02Down
Larval Salivary gland6 ± 20 of 4 0.03Down
Larval midgut4 ± 10 of 4 0.02Down
Larval tubule6 ± 20 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body171 ± 943 of 4 1.00None
Larval trachea5 ± 81 of 4 0.03Down
Larval carcass4 ± 10 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly179 ± 134 of 4

Looking for FBgn0037985. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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