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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037987 through 18771 annotations produced 1 hits



(CG14739):

Annotation Number : CG14739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037987
Gbrowse : chr3R:7873974-7874935 (-) // 100.0 //
Probeset : 1634765_at
Accessions : protein= NP_650151;, nucleotide= NM_141894;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0037987.
Homophila reports that CG14739 is a close match (4e-16) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG14739 interacts with CG1792 CG8580 CG15631 CG17666 CG3052 CG4303 CG9106 .
VDRC has 2 RNAi stocks for FBgn0037987 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.09Down
Crop3 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart3 ± 00 of 4 0.04Down
Fat body2 ± 30 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis1047 ± 104 of 412.10Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass9 ± 20 of 4 0.10Down
Larval CNS2 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 10 of 4 0.03Down
Larval midgut6 ± 10 of 4 0.07Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body93 ± 404 of 4 1.10None
Larval trachea4 ± 71 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly86 ± 34 of 4

Looking for FBgn0037987. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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