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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037992 through 18771 annotations produced 1 hits



(CG4702):

Annotation Number : CG4702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037992
Gbrowse : chr3R:7947298-7953919 (-) // 100.0 //
Probeset : 1636458_at
Accessions : protein= NP_650156;, nucleotide= NM_141899;
FlyMine data for FBgn0037992.
BDGP gene expression has embryonic in situ data for CG4702: 74 pix of staining in 20 body parts.
VDRC has 1 RNAi stocks for FBgn0037992 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.20None
Head1 ± 00 of 4 0.10None
Eye2 ± 00 of 4 0.09None
Thoracicoabdominal ganglion3 ± 10 of 4 0.10None
Salivary gland8 ± 00 of 4 0.32None
Crop8 ± 20 of 4 0.30None
Midgut8 ± 30 of 4 0.30None
Tubule1 ± 00 of 4 0.10Down
Hindgut9 ± 21 of 4 0.40None
Heart1 ± 10 of 4 0.07None
Fat body6 ± 50 of 4 0.25None
Ovary0 ± 00 of 4 0.00None
Testis18 ± 21 of 4 0.70None
Male accessory glands1 ± 00 of 4 0.00None
Virgin spermatheca1 ± 00 of 4 0.08None
Mated spermatheca1 ± 00 of 4 0.05None
Adult carcass5 ± 20 of 4 0.20None
Larval CNS4 ± 10 of 4 0.16None
Larval Salivary gland3 ± 10 of 4 0.15None
Larval midgut4 ± 10 of 4 0.16None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut28 ± 14 of 4 1.13None
Larval fat body14 ± 11 of 4 0.60None
Larval trachea23 ± 14 of 4 0.93None
Larval carcass7 ± 10 of 4 0.31None
S2 cells (growing)3 ± 00 of 4 0.12None
Whole fly25 ± 82 of 4

Looking for FBgn0037992. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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