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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037996 through 18771 annotations produced 1 hits



(CG4830):

Annotation Number : CG4830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037996
Gbrowse : chr3R:8033878-8036079 (-) // 100.0 //
Probeset : 1623398_at
Accessions : protein= NP_650160;, nucleotide= NM_141903;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0037996.
BDGP gene expression has embryonic in situ data for CG4830: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 00 of 4 0.02Down
Thoracicoabdominal ganglion8 01 of 4 0.10Down
Salivary gland23 21 of 4 0.21Down
Crop2 00 of 4 0.00Down
Midgut763 1044 of 4 6.70Up
Tubule13 51 of 4 0.10Down
Hindgut4 10 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body1 00 of 4 0.01Down
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands10 30 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.02Down
Adult carcass8 20 of 4 0.10Down
Larval CNS4 20 of 4 0.04Down
Larval Salivary gland3 00 of 4 0.03Down
Larval midgut3767 954 of 433.16Up
Larval tubule5 00 of 4 0.00Down
Larval hindgut5 10 of 4 0.05Down
Larval fat body8 31 of 4 0.10Down
Larval trachea26 491 of 4 0.24Down
Larval carcass8 10 of 4 0.07Down
S2 cells (growing)3 10 of 4 0.03Down
Whole fly113 114 of 4

Looking for FBgn0037996. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime