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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037998 through 18771 annotations produced 1 hits


Annotation Number : CG4848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037998
Gbrowse : chr3R:8041376-8045412 (-) // 100.0 //
Probeset : 1638465_at
Accessions : protein= NP_650162;, nucleotide= NM_141905;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037998.
BDGP gene expression has embryonic in situ data for CG4848: 20 pix of staining in 6 body parts.
Homophila reports that CG4848 is a close match (7e-15) to human gene CDG2G;COG1;KIAA1381;LDLB (NP_061184), a gene associated with Congenital disorder of glycosylation, type IIg, 611209 (3).
BioGrid reports that CG4848 interacts with CG6488 .
TRiP has 1 RNAi stocks for FBgn0037998 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037998 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 44 of 4 1.30None
Head70 24 of 4 0.80None
Eye88 44 of 4 1.06None
Thoracicoabdominal ganglion97 24 of 4 1.20Up
Salivary gland265 174 of 4 3.18Up
Crop77 34 of 4 0.90None
Midgut93 24 of 4 1.10None
Tubule77 34 of 4 0.90None
Hindgut82 44 of 4 1.00None
Heart59 34 of 4 0.72Down
Fat body73 94 of 4 0.88None
Ovary123 54 of 4 1.50Up
Testis128 54 of 4 1.50Up
Male accessory glands165 34 of 4 2.00Up
Virgin spermatheca87 43 of 4 1.05None
Mated spermatheca87 53 of 4 1.05None
Adult carcass73 54 of 4 0.90None
Larval CNS88 14 of 4 1.06None
Larval Salivary gland336 154 of 4 4.04Up
Larval midgut96 34 of 4 1.16None
Larval tubule94 44 of 4 1.10None
Larval hindgut94 64 of 4 1.13None
Larval fat body95 44 of 4 1.10None
Larval trachea83 94 of 4 1.01None
Larval carcass80 54 of 4 0.97None
S2 cells (growing)188 44 of 4 2.26Up
Whole fly83 44 of 4

Looking for FBgn0037998. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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