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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038000 through 18771 annotations produced 1 hits


Annotation Number : CG10014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038000
Gbrowse : chr3R:8048108-8049770 (+) // 100.0 //
Probeset : 1638901_at
Accessions : protein= NP_650164;, nucleotide= NM_141907;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator
FlyMine data for FBgn0038000.
BDGP gene expression has embryonic in situ data for CG10014: 4 pix of staining in 1 body parts.
BioGrid reports that CG10014 interacts with CG8472 CG11327 CG9610 .
VDRC has 3 RNAi stocks for FBgn0038000 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland6 30 of 4 0.11Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 10 of 4 0.00Down
Hindgut3 10 of 4 0.10Down
Heart5 10 of 4 0.09Down
Fat body6 60 of 4 0.12Down
Ovary1 00 of 4 0.00Down
Testis811 304 of 413.80Up
Male accessory glands4 30 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass4 10 of 4 0.10Down
Larval CNS1 10 of 4 0.03Down
Larval Salivary gland4 10 of 4 0.08Down
Larval midgut1 00 of 4 0.03Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body97 473 of 4 1.70None
Larval trachea6 71 of 4 0.10Down
Larval carcass6 20 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly58 14 of 4

Looking for FBgn0038000. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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