Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038003 through 18771 annotations produced 1 hits



(CG3916):

Annotation Number : CG3916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038003
Gbrowse : chr3R:8055177-8056041 (+) // 100.0 //
Probeset : 1633323_at
Accessions : protein= NP_650167;, nucleotide= NM_141910;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038003.
Homophila reports that CG3916 is a close match (2e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
TRiP has 1 RNAi stocks for FBgn0038003 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.60None
Eye1 ± 00 of 4 0.42Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.50None
Salivary gland10 ± 10 of 4 2.25Up
Crop2 ± 20 of 4 0.60None
Midgut12 ± 30 of 4 2.90None
Tubule1 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.30Down
Heart1 ± 00 of 4 0.26Down
Fat body2 ± 20 of 4 0.45None
Ovary0 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.40None
Male accessory glands3 ± 10 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.13Down
Mated spermatheca0 ± 00 of 4 0.15Down
Adult carcass6 ± 20 of 4 1.40None
Larval CNS1 ± 10 of 4 0.29Down
Larval Salivary gland5 ± 20 of 4 1.13None
Larval midgut13 ± 10 of 4 3.08Up
Larval tubule18 ± 21 of 4 4.20Up
Larval hindgut4 ± 10 of 4 0.89None
Larval fat body8 ± 20 of 4 1.80None
Larval trachea1 ± 00 of 4 0.24Down
Larval carcass4 ± 10 of 4 0.92None
S2 cells (growing)1 ± 00 of 4 0.38None
Whole fly4 ± 00 of 4

Looking for FBgn0038003. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime