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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038007 through 18771 annotations produced 1 hits



Cyp313a3 (Cyp313a3):

Annotation Number : CG10093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038007
Gbrowse : chr3R:8063000-8064831 (-) // 100.0 //
Probeset : 1628591_at
Accessions : protein= NP_650170;, nucleotide= NM_141913;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038007.
Homophila reports that CG10093 is a close match (9e-11) to human gene CYP5;GHOSAL;TBXAS1 (NP_112246), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
VDRC has 3 RNAi stocks for FBgn0038007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head1 10 of 4 0.20Down
Eye4 10 of 4 0.53None
Thoracicoabdominal ganglion3 10 of 4 0.40None
Salivary gland7 20 of 4 0.96None
Crop3 00 of 4 0.40Down
Midgut2 10 of 4 0.30Down
Tubule7 10 of 4 0.90None
Hindgut4 00 of 4 0.50Down
Heart1 00 of 4 0.17Down
Fat body1 20 of 4 0.22Down
Ovary0 00 of 4 0.10Down
Testis2 10 of 4 0.30Down
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca56 64 of 4 7.06Up
Mated spermatheca85 64 of 410.72Up
Adult carcass9 41 of 4 1.20None
Larval CNS3 20 of 4 0.45Down
Larval Salivary gland0 00 of 4 0.10Down
Larval midgut3 00 of 4 0.39Down
Larval tubule3 10 of 4 0.40Down
Larval hindgut2 10 of 4 0.27Down
Larval fat body4 10 of 4 0.50None
Larval trachea670 1084 of 484.13Up
Larval carcass7 31 of 4 0.95None
S2 cells (growing)1 10 of 4 0.22Down
Whole fly8 02 of 4

Looking for FBgn0038007. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime