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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038014 through 18771 annotations produced 1 hits



(CG10041):

Annotation Number : CG10041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038014
Gbrowse : chr3R:8176608-8177740 (-) // 100.0 //
Probeset : 1624414_at
Accessions : protein= NP_650177;, nucleotide= NM_141920;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038014.
Homophila reports that CG10041 is a close match (3e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_076927), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 4 RNAi stocks for FBgn0038014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head0 00 of 4 0.00Down
Eye3 10 of 4 0.16Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland16 50 of 4 0.69None
Crop4 10 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart2 10 of 4 0.12Down
Fat body1 10 of 4 0.07Down
Ovary0 00 of 4 0.00Down
Testis2 10 of 4 0.10Down
Male accessory glands1928 1194 of 481.80Up
Virgin spermatheca4 20 of 4 0.19Down
Mated spermatheca4 10 of 4 0.18Down
Adult carcass7 40 of 4 0.30Down
Larval CNS1 00 of 4 0.07Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut6 10 of 4 0.28Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body7 00 of 4 0.30Down
Larval trachea1 20 of 4 0.07Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)10 00 of 4 0.43Down
Whole fly23 32 of 4

Looking for FBgn0038014. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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