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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038017 through 18771 annotations produced 1 hits


Annotation Number : CG4115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038017
Gbrowse : chr3R:8185732-8188975 (+) // 100.0 //
Probeset : 1638554_at
Accessions : protein= NP_650179;, nucleotide= NM_141922;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annot
FlyMine data for FBgn0038017.
BDGP gene expression has embryonic in situ data for CG4115: 20 pix of staining in 10 body parts.
TRiP has 1 RNAi stocks for FBgn0038017 available for purchase.
VDRC has 4 RNAi stocks for FBgn0038017 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.10Down
Head76 54 of 4 1.30None
Eye42 34 of 4 0.70None
Thoracicoabdominal ganglion10 10 of 4 0.20Down
Salivary gland20 51 of 4 0.33Down
Crop2505 1194 of 441.20Up
Midgut57 64 of 4 0.90None
Tubule20 51 of 4 0.30Down
Hindgut365 244 of 4 6.00Up
Heart8 30 of 4 0.13Down
Fat body24 41 of 4 0.39Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca94 54 of 4 1.56Up
Mated spermatheca103 74 of 4 1.71Up
Adult carcass25 30 of 4 0.40Down
Larval CNS80 234 of 4 1.32None
Larval Salivary gland15 30 of 4 0.26Down
Larval midgut291 134 of 4 4.80Up
Larval tubule14 10 of 4 0.20Down
Larval hindgut485 544 of 4 7.99Up
Larval fat body28 52 of 4 0.50Down
Larval trachea1914 1414 of 431.52Up
Larval carcass295 414 of 4 4.86Up
S2 cells (growing)3 00 of 4 0.06Down
Whole fly60 94 of 4

Looking for FBgn0038017. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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