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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038029 through 18771 annotations produced 1 hits



(CG17639):

Annotation Number : CG17639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038029
Gbrowse : chr3R:8209082-8211348 (+) // 100.0 //
Probeset : 1628094_at
Accessions : protein= NP_001138040; /// NP_650183;, nucleotide= NM_001144568; /// NM_141926;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0038029.
BDGP gene expression has embryonic in situ data for CG17639: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038029 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 34 of 4 3.10Up
Head105 34 of 4 7.10Up
Eye16 33 of 4 1.08None
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland11 20 of 4 0.77None
Crop9 21 of 4 0.60None
Midgut8 00 of 4 0.60Down
Tubule7 10 of 4 0.50Down
Hindgut71 24 of 4 4.80Up
Heart4 21 of 4 0.28Down
Fat body8 20 of 4 0.56Down
Ovary3 00 of 4 0.20Down
Testis5 00 of 4 0.40Down
Male accessory glands10 10 of 4 0.70None
Virgin spermatheca5 10 of 4 0.35Down
Mated spermatheca5 21 of 4 0.38Down
Adult carcass20 11 of 4 1.40Up
Larval CNS15 24 of 4 1.06None
Larval Salivary gland5 20 of 4 0.36Down
Larval midgut7 20 of 4 0.49Down
Larval tubule6 20 of 4 0.40Down
Larval hindgut4 00 of 4 0.29Down
Larval fat body7 00 of 4 0.50Down
Larval trachea2 10 of 4 0.15Down
Larval carcass10 21 of 4 0.70None
S2 cells (growing)3 10 of 4 0.21Down
Whole fly15 14 of 4

Looking for FBgn0038029. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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