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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038032 through 18771 annotations produced 1 hits



/// (CG10096 /// CG10097):

Annotation Number : CG32919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038032 /// FBgn0038033
Gbrowse : chr3R:8216404-8221702 (-) // 100.0 //
Probeset : 1630072_a_at
Accessions : protein= NP_001027182; /// NP_001027183; /// NP_650186; /// NP_731699;, nucleotide= NM_001032011; /// NM_001032012; /// NM_141929; /// NM_169464;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0038032 /// FBgn0038033.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.00Down
Head139 94 of 4 0.20Down
Eye15 53 of 4 0.02Down
Thoracicoabdominal ganglion16 23 of 4 0.00Down
Salivary gland4 20 of 4 0.01Down
Crop1517 584 of 4 1.80Up
Midgut256 54 of 4 0.30Down
Tubule52 153 of 4 0.10Down
Hindgut5404 1604 of 4 6.40Up
Heart350 294 of 4 0.41Down
Fat body234 244 of 4 0.28Down
Ovary1 10 of 4 0.00Down
Testis3 11 of 4 0.00Down
Male accessory glands7 21 of 4 0.00Down
Virgin spermatheca8 20 of 4 0.01Down
Mated spermatheca9 41 of 4 0.01Down
Adult carcass352 504 of 4 0.40Down
Larval CNS8 23 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut19 44 of 4 0.02Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut7 00 of 4 0.01Down
Larval fat body6 10 of 4 0.00Down
Larval trachea8 71 of 4 0.01Down
Larval carcass5 10 of 4 0.01Down
S2 cells (growing)16 04 of 4 0.02Down
Whole fly850 934 of 4

Looking for FBgn0038032. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime