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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038034 through 18771 annotations produced 1 hits



Cyp9f3Psi (Cyp9f3Psi):

Annotation Number : CR17875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038034
Gbrowse : chr3R:8221729-8224644 (-) // 100.0 // /// chr3R:8229058-8231635 (-) // 66.91 //
Probeset : 1640584_at
Accessions : protein= , nucleotide=
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inf
FlyMine data for FBgn0038034.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 84 of 4 3.20Up
Head64 54 of 4 2.70Up
Eye81 24 of 4 3.34Up
Thoracicoabdominal ganglion112 94 of 4 4.60Up
Salivary gland15 03 of 4 0.65Down
Crop265 84 of 410.90Up
Midgut189 44 of 4 7.80Up
Tubule53 84 of 4 2.20Up
Hindgut94 44 of 4 3.90Up
Heart48 34 of 4 1.98Up
Fat body19 34 of 4 0.80Down
Ovary12 04 of 4 0.50Down
Testis5 13 of 4 0.20Down
Male accessory glands21 24 of 4 0.90None
Virgin spermatheca15 14 of 4 0.65Down
Mated spermatheca13 14 of 4 0.54Down
Adult carcass21 44 of 4 0.90None
Larval CNS63 54 of 4 2.63Up
Larval Salivary gland5 02 of 4 0.23Down
Larval midgut200 344 of 4 8.27Up
Larval tubule23 04 of 4 0.90None
Larval hindgut77 34 of 4 3.20Up
Larval fat body123 124 of 4 5.10Up
Larval trachea36 54 of 4 1.50Up
Larval carcass25 14 of 4 1.04None
S2 cells (growing)244 64 of 410.08Up
Whole fly24 04 of 4

Looking for FBgn0038034. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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