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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038039 through 18771 annotations produced 1 hits



(CG5196):

Annotation Number : CG5196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038039
Gbrowse : chr3R:8234043-8237380 (+) // 100.0 //
Probeset : 1623448_at
Accessions : protein= NP_650191; /// NP_996201;, nucleotide= NM_141934; /// NM_206479;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0038039.
Homophila reports that CG5196 is a close match (1e-11) to human gene (NP_057116), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0038039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 24 of 4 1.20Up
Head106 14 of 4 0.90Down
Eye199 44 of 4 1.63Up
Thoracicoabdominal ganglion170 14 of 4 1.40Up
Salivary gland185 104 of 4 1.51Up
Crop162 64 of 4 1.30Up
Midgut174 94 of 4 1.40Up
Tubule156 104 of 4 1.30Up
Hindgut120 24 of 4 1.00None
Heart309 84 of 4 2.51Up
Fat body136 324 of 4 1.11None
Ovary201 44 of 4 1.60Up
Testis48 04 of 4 0.40Down
Male accessory glands204 124 of 4 1.70Up
Virgin spermatheca71 44 of 4 0.58Down
Mated spermatheca72 24 of 4 0.59Down
Adult carcass150 64 of 4 1.20Up
Larval CNS204 104 of 4 1.67Up
Larval Salivary gland310 154 of 4 2.52Up
Larval midgut184 114 of 4 1.50Up
Larval tubule191 24 of 4 1.60Up
Larval hindgut157 64 of 4 1.28Up
Larval fat body150 64 of 4 1.20Up
Larval trachea186 84 of 4 1.52Up
Larval carcass117 84 of 4 0.96None
S2 cells (growing)376 94 of 4 3.06Up
Whole fly123 14 of 4

Looking for FBgn0038039. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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