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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038043 through 18771 annotations produced 1 hits



(CG17202):

Annotation Number : CG17202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038043
Gbrowse : chr3R:8248489-8249334 (+) // 100.0 //
Probeset : 1635603_at
Accessions : protein= NP_650194;, nucleotide= NM_141937;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation
FlyMine data for FBgn0038043.
VDRC has 3 RNAi stocks for FBgn0038043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 ± 64 of 4 0.70Down
Head98 ± 84 of 4 0.40Down
Eye174 ± 104 of 4 0.63Down
Thoracicoabdominal ganglion134 ± 64 of 4 0.50Down
Salivary gland92 ± 94 of 4 0.33Down
Crop57 ± 34 of 4 0.20Down
Midgut101 ± 54 of 4 0.40Down
Tubule51 ± 14 of 4 0.20Down
Hindgut83 ± 54 of 4 0.30Down
Heart78 ± 34 of 4 0.28Down
Fat body76 ± 74 of 4 0.28Down
Ovary456 ± 194 of 4 1.60Up
Testis251 ± 154 of 4 0.90None
Male accessory glands317 ± 104 of 4 1.10None
Virgin spermatheca48 ± 34 of 4 0.17Down
Mated spermatheca52 ± 44 of 4 0.19Down
Adult carcass61 ± 34 of 4 0.20Down
Larval CNS397 ± 444 of 4 1.43Up
Larval Salivary gland210 ± 104 of 4 0.76None
Larval midgut94 ± 74 of 4 0.34Down
Larval tubule102 ± 14 of 4 0.40Down
Larval hindgut106 ± 54 of 4 0.38Down
Larval fat body167 ± 74 of 4 0.60Down
Larval trachea244 ± 254 of 4 0.88None
Larval carcass113 ± 64 of 4 0.41Down
S2 cells (growing)127 ± 24 of 4 0.46Down
Whole fly277 ± 314 of 4

Looking for FBgn0038043. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime