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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038047 through 18771 annotations produced 1 hits



/// (CG5245 /// DpseGA26228):

Annotation Number : CG5245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038047
Gbrowse : chr3R:8255391-8256897 (+) // 100.0 //
Probeset : 1637467_at
Accessions : protein= NP_650197;, nucleotide= NM_141940;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0038047.
Homophila reports that CG5245 is a close match (4e-12) to human gene HSAL4;SALL4 (NP_065169), a gene associated with Duane-radial ray syndrome, 607323 (3);IVIC syndrome, 147750 (3).
VDRC has 3 RNAi stocks for FBgn0038047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.70None
Head7 ± 11 of 4 0.60Down
Eye7 ± 11 of 4 0.60None
Thoracicoabdominal ganglion9 ± 13 of 4 0.70None
Salivary gland3 ± 10 of 4 0.28Down
Crop6 ± 20 of 4 0.50None
Midgut4 ± 20 of 4 0.30Down
Tubule3 ± 10 of 4 0.30Down
Hindgut5 ± 11 of 4 0.40Down
Heart5 ± 11 of 4 0.46Down
Fat body12 ± 31 of 4 0.92None
Ovary47 ± 24 of 4 3.70Up
Testis10 ± 04 of 4 0.80None
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca10 ± 22 of 4 0.81None
Mated spermatheca10 ± 11 of 4 0.83None
Adult carcass8 ± 20 of 4 0.60None
Larval CNS17 ± 24 of 4 1.31None
Larval Salivary gland3 ± 20 of 4 0.27Down
Larval midgut5 ± 10 of 4 0.44Down
Larval tubule4 ± 10 of 4 0.40Down
Larval hindgut3 ± 00 of 4 0.27Down
Larval fat body9 ± 31 of 4 0.70None
Larval trachea8 ± 23 of 4 0.63None
Larval carcass2 ± 00 of 4 0.17Down
S2 cells (growing)27 ± 14 of 4 2.09Up
Whole fly13 ± 14 of 4

Looking for FBgn0038047. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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