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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038051 through 18771 annotations produced 2 hits



(CG17207):

Annotation Number : AT11646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038051
Gbrowse :
Probeset : 1627235_at
Accessions : protein= NP_996202;, nucleotide= NM_206480;
FlyMine data for FBgn0038051.
BDGP gene expression has embryonic in situ data for CG17207: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye4 ± 20 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.10Down
Crop0 ± 00 of 4 0.00Down
Midgut4 ± 20 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.08Down
Fat body3 ± 20 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis440 ± 114 of 413.30Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.23Down
Mated spermatheca3 ± 10 of 4 0.09Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.12Down
Larval Salivary gland5 ± 20 of 4 0.17Down
Larval midgut4 ± 10 of 4 0.13Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body80 ± 422 of 4 2.40None
Larval trachea4 ± 30 of 4 0.13Down
Larval carcass3 ± 00 of 4 0.10Down
S2 cells (growing)13 ± 20 of 4 0.41Down
Whole fly33 ± 34 of 4



(CG17207):

Annotation Number : CT34543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038051
Gbrowse : chr3R:8264129-8264792 (-) // 100.0 //
Probeset : 1634933_s_at
Accessions : protein= NP_996202;, nucleotide= NM_206480;
FlyMine data for FBgn0038051.
BDGP gene expression has embryonic in situ data for CG17207: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40Down
Head4 ± 10 of 4 0.40Down
Eye5 ± 10 of 4 0.55None
Thoracicoabdominal ganglion5 ± 20 of 4 0.50None
Salivary gland11 ± 00 of 4 1.17None
Crop10 ± 02 of 4 1.10None
Midgut9 ± 20 of 4 1.00None
Tubule10 ± 01 of 4 1.10None
Hindgut11 ± 12 of 4 1.20None
Heart5 ± 01 of 4 0.58Down
Fat body12 ± 13 of 4 1.33None
Ovary4 ± 11 of 4 0.40Down
Testis38 ± 34 of 4 4.10Up
Male accessory glands15 ± 03 of 4 1.70Up
Virgin spermatheca6 ± 20 of 4 0.70None
Mated spermatheca8 ± 11 of 4 0.87None
Adult carcass9 ± 51 of 4 1.00None
Larval CNS2 ± 10 of 4 0.31Down
Larval Salivary gland6 ± 10 of 4 0.63None
Larval midgut14 ± 13 of 4 1.48None
Larval tubule8 ± 00 of 4 0.80None
Larval hindgut7 ± 20 of 4 0.75None
Larval fat body23 ± 21 of 4 2.50Up
Larval trachea4 ± 20 of 4 0.44Down
Larval carcass8 ± 11 of 4 0.87None
S2 cells (growing)12 ± 04 of 4 1.28None
Whole fly9 ± 11 of 4

Looking for FBgn0038051. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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