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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038053 through 18771 annotations produced 1 hits



(CG18549):

Annotation Number : CG18549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038053
Gbrowse : chr3R:8275017-8282084 (+) // 100.0 //
Probeset : 1625324_at
Accessions : protein= NP_650203;, nucleotide= NM_141946;
FlyMine data for FBgn0038053.
BDGP gene expression has embryonic in situ data for CG18549: 17 pix of staining in 19 body parts.
TRiP has 1 RNAi stocks for FBgn0038053 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain445 34 of 4 3.10Up
Head232 64 of 4 1.60Up
Eye303 164 of 4 2.10Up
Thoracicoabdominal ganglion410 234 of 4 2.80Up
Salivary gland299 134 of 4 2.07Up
Crop69 34 of 4 0.50Down
Midgut90 34 of 4 0.60Down
Tubule769 774 of 4 5.30Up
Hindgut178 54 of 4 1.20Up
Heart422 234 of 4 2.91Up
Fat body232 214 of 4 1.60Up
Ovary229 64 of 4 1.60Up
Testis18 24 of 4 0.10Down
Male accessory glands253 194 of 4 1.80Up
Virgin spermatheca335 254 of 4 2.32Up
Mated spermatheca279 204 of 4 1.93Up
Adult carcass173 104 of 4 1.20None
Larval CNS117 64 of 4 0.81None
Larval Salivary gland555 224 of 4 3.83Up
Larval midgut43 44 of 4 0.30Down
Larval tubule739 474 of 4 5.10Up
Larval hindgut71 84 of 4 0.50Down
Larval fat body799 594 of 4 5.50Up
Larval trachea335 354 of 4 2.32Up
Larval carcass644 974 of 4 4.45Up
S2 cells (growing)865 164 of 4 5.97Up
Whole fly144 94 of 4

Looking for FBgn0038053. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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