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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038055 through 18771 annotations produced 1 hits



toys are us (trus):

Annotation Number : CG5333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038055
Gbrowse : chr3R:8282293-8283929 (+) // 100.0 //
Probeset : 1624226_at
Accessions : protein= NP_650205;, nucleotide= NM_141948;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038055.
BioGrid reports that CG5333 interacts with CG5920 CG6869 CG5450 CG5792 CG7671 CG8319 CG8364 .
VDRC has 2 RNAi stocks for FBgn0038055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 ± 54 of 4 3.20Up
Head73 ± 24 of 4 1.10None
Eye148 ± 84 of 4 2.33Up
Thoracicoabdominal ganglion284 ± 74 of 4 4.40Up
Salivary gland43 ± 32 of 4 0.67Down
Crop37 ± 33 of 4 0.60Down
Midgut45 ± 23 of 4 0.70None
Tubule32 ± 22 of 4 0.50Down
Hindgut27 ± 30 of 4 0.40Down
Heart18 ± 04 of 4 0.29Down
Fat body35 ± 24 of 4 0.55Down
Ovary140 ± 94 of 4 2.20Up
Testis33 ± 14 of 4 0.50Down
Male accessory glands47 ± 43 of 4 0.70None
Virgin spermatheca22 ± 13 of 4 0.35Down
Mated spermatheca21 ± 01 of 4 0.33Down
Adult carcass32 ± 20 of 4 0.50Down
Larval CNS134 ± 164 of 4 2.10Up
Larval Salivary gland34 ± 14 of 4 0.54Down
Larval midgut29 ± 10 of 4 0.45Down
Larval tubule26 ± 30 of 4 0.40Down
Larval hindgut30 ± 23 of 4 0.48Down
Larval fat body31 ± 13 of 4 0.50Down
Larval trachea47 ± 44 of 4 0.74None
Larval carcass39 ± 33 of 4 0.63Down
S2 cells (growing)67 ± 24 of 4 1.06None
Whole fly63 ± 64 of 4

Looking for FBgn0038055. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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