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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038058 through 18771 annotations produced 1 hits


Annotation Number : CG5608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038058
Gbrowse : chr3R:8288283-8291020 (-) // 100.0 //
Probeset : 1640366_at
Accessions : protein= NP_650208;, nucleotide= NM_141951;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038058.
BioGrid reports that CG5608 interacts with CG6251 .
TRiP has 1 RNAi stocks for FBgn0038058 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038058 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 24 of 4 1.20Up
Head77 44 of 4 0.90None
Eye77 34 of 4 0.86Down
Thoracicoabdominal ganglion114 34 of 4 1.30Up
Salivary gland133 124 of 4 1.48Up
Crop77 34 of 4 0.90Down
Midgut112 34 of 4 1.20Up
Tubule162 74 of 4 1.80Up
Hindgut88 34 of 4 1.00None
Heart85 54 of 4 0.94None
Fat body77 74 of 4 0.85Down
Ovary155 24 of 4 1.70Up
Testis26 34 of 4 0.30Down
Male accessory glands120 44 of 4 1.30Up
Virgin spermatheca112 14 of 4 1.24Up
Mated spermatheca122 44 of 4 1.36Up
Adult carcass60 54 of 4 0.70Down
Larval CNS92 54 of 4 1.03None
Larval Salivary gland113 54 of 4 1.26Up
Larval midgut111 34 of 4 1.23Up
Larval tubule168 14 of 4 1.90Up
Larval hindgut107 14 of 4 1.19Up
Larval fat body91 34 of 4 1.00None
Larval trachea62 84 of 4 0.70Down
Larval carcass74 34 of 4 0.83Down
S2 cells (growing)131 14 of 4 1.46Up
Whole fly90 34 of 4

Looking for FBgn0038058. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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